rs72791127 chr2:38115424 G>A
- Sequence
gtccctcactaacacaagatcgcc[G/A]tctaggggccaatcgtagaactac
- ASB in cell types
- GM12890 (Lymphoblastoid Cell Lines) GM12892 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney) HUVEC-C (HUVEC, umbilical vein endothelial cells)
- ASB for transcription factors
- STAG1_HUMAN ZN785_HUMAN STAT1_HUMAN IKZF3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | -0.99 | 0.88 | 1.00 | n/a | n/a | |||
| ZN785_HUMAN | 3.64 | -3.43 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.95 | -1.91 | 1.00 | n/a | No Hit | |||
| IKZF3_HUMAN | 2.56 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood