rs72794132 chr5:151239432 C>T
- Sequence
cctgagttgggtagcggccgcccc[C/T]tcttggcggcatggatgtactaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) sigmoid colon
- ASB for transcription factors
- IKZF2_HUMAN IKZF1_HUMAN CTCF_HUMAN TRI22_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 3.43 | -3.30 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | 2.96 | -2.95 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 2.51 | -2.70 | 3.50 | -4.48 | Concordant | |||
| TRI22_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood