rs72794341 chr5:120656024 A>T
- Sequence
tagacagagcatgcagttgccacc[A/T]ggtggtgccaaattccaactggga
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) NB69 (neuroblastoma) bronchial epithelial cells
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.79 | 0.07 | 2.54 | -4.15 | Concordant | |||
| STAG1_HUMAN | 3.80 | n/a | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 2.09 | n/a | 4.50 | n/a | n/a | |||
| SMC3_HUMAN | 2.00 | -0.44 | 2.00 | n/a | n/a |
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Motif analysis
