rs72798131 chr16:29811636 C>T
- Sequence
gcgaggtagagaatgaaagctgca[C/T]ctgtccctcatcctgggcatgggc
- ASB in cell types
- HepG2 (hepatoblastoma) HCT-116 (colon carcinoma) GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- TYY1_HUMAN ANDR_HUMAN SMAD2_HUMAN PO2F1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.03 | 1.77 | 1.60 | n/a | No Hit | |||
| ANDR_HUMAN | 2.79 | n/a | 2.00 | n/a | No Hit | |||
| SMAD2_HUMAN | -3.99 | 1.71 | 2.00 | n/a | No Hit | |||
| PO2F1_HUMAN | n/a | 2.77 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid