rs72800127 chr2:30707123 G>A
- Sequence
tcacccaaggagtgtcacccaagg[G/A]tcctgcccgctcacagttttgaag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) foreskin keratinocyte
- ASB for transcription factors
- PKNX1_HUMAN RAD21_HUMAN CTCF_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -3.27 | 3.58 | 1.00 | n/a | No Hit | |||
| RAD21_HUMAN | -0.02 | 1.54 | 1.60 | n/a | n/a | |||
| CTCF_HUMAN | 0.76 | 0.79 | 1.40 | n/a | No Hit | |||
| SMC1A_HUMAN | 0.30 | 1.76 | 1.00 | n/a | n/a |
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