rs72802394 chr16:75250706 G>C
- Sequence
tcagcctctcggaccctcgagagg[G/C]agctccgaccctgctctagctctt
- ASB in cell types
- MS-1 (Small cell lung carcinoma) HT1080 (fibrosarcoma) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- STAG1_HUMAN SSRP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 2.27 | n/a | 1.00 | n/a | n/a | |||
| SSRP1_HUMAN | 1.33 | -0.66 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Putamen_basal_ganglia, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood