rs72803334 chr16:89316472 C>T
- Sequence
actgcaaggcaggaagtctgcaca[C/T]caggaatcagcgttaaccgcacat
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) RCC 7860 (Renal cell carcinoma)
- ASB for transcription factors
- IKZF1_HUMAN ETS1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.26 | -0.10 | 1.25 | n/a | n/a | |||
| ETS1_HUMAN | 1.92 | -1.61 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.76 | -0.97 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Thyroid, Whole_Blood