rs72809474 chr2:61117723 A>G
- Sequence
ctagacaaccccactgaataatgt[A/G]ttattttatgcatctgtggttttg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN TBX21_HUMAN MEF2B_HUMAN ZN217_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -1.40 | 1.40 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | -3.24 | 3.10 | 1.00 | 5.62 | Concordant | |||
| MEF2B_HUMAN | -1.95 | 2.39 | 1.00 | 2.10 | Concordant | |||
| ZN217_HUMAN | n/a | 2.49 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid