rs72809668 chr2:26244785 C>T
- Sequence
acatggccgaaaggtcgtattctc[C/T]gggggaggacgggggcccggagag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) RMG-1 22RV1 (prostate carcinoma)
- ASB for transcription factors
- KAISO_HUMAN ARI1A_HUMAN ANDR_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KAISO_HUMAN | -0.95 | 3.28 | 2.00 | n/a | No Hit | |||
| ARI1A_HUMAN | 2.33 | -0.90 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.01 | 0.01 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.53 | 1.63 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid