rs72812027 chr17:889283 T>C
- Sequence
aaagcccagcacctgcacgtgccc[T/C]gtgcttcagtgatgaagctaccgt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- BHE40_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | 1.96 | n/a | 1.33 | 0.08 | Weak Discordant | |||
| IKZF2_HUMAN | 1.70 | -1.33 | 1.00 | n/a | n/a |
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Motif analysis
