rs72813274 chr10:70656685 T>C
- Sequence
tggaccagcagggctcagaggctt[T/C]gcagaagtgatctcatccacccac
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) MDM(monocyte derived macrophages) MDA-MB-231 (breast adenocarcinoma) MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.47 | 1.56 | 2.00 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.12 | 1.74 | 2.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.75 | 1.55 | 1.62 | -2.17 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood