rs72813275 chr10:70656739 G>A
- Sequence
gttcagatgaggctgggatgcaga[G/A]agcggaaggcactgcctagagcta
- ASB in cell types
- MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) BJ1-hTERT (Human fibroblast telomerase immortalized cell line) MDA-MB-231 (breast adenocarcinoma) EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- EGR1_HUMAN JUN_HUMAN TCF21_HUMAN CDN1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | -0.35 | 1.46 | 1.00 | n/a | No Hit | |||
| JUN_HUMAN | 0.16 | 1.27 | 2.00 | n/a | No Hit | |||
| TCF21_HUMAN | 0.59 | n/a | 2.50 | n/a | No Hit | |||
| CDN1B_HUMAN | 0.41 | 1.58 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood