rs72815091 chr17:32819385 A>G

Sequence
cccagcttctgcttctgccttttc[A/G]ttcagtccattcccctccgtttac
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
HTF4_HUMAN NCOR1_HUMAN IKZF1_HUMAN NCOA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HTF4_HUMAN 2.23 n/a 2.1·10-61.00 2.00 n/a No Hit
NCOR1_HUMAN 1.73 -1.15 5.9·10-41.00 2.00 n/a n/a
IKZF1_HUMAN 2.01 n/a 3.2·10-31.00 3.00 n/a n/a
NCOA1_HUMAN 2.49 -1.55 3.3·10-31.00 2.00 n/a n/a
HDAC1_HUMAN 2.39 0.69 3.8·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Skin_Not_Sun_Exposed_Suprapubic,  Spleen,  Thyroid

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