rs72818117 chr5:158014122 G>A
- Sequence
tctttcttgctgccagagggtgtc[G/A]ctggtgaagctgaattctgcacgg
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) IPSC-derived bipolar neuron VCaP (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.92 | -0.83 | 1.07 | -1.08 | Weak Concordant | |||
| STAG1_HUMAN | 3.63 | -4.01 | 1.25 | n/a | n/a | |||
| RAD21_HUMAN | 1.88 | -1.91 | 1.00 | n/a | n/a |
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Motif analysis
