rs72819342 chr2:61764342 G>C
- Sequence
gcccgcggccgcgcaacgatgggc[G/C]ggacggggcagaagtgtgggcgag
- ASB in cell types
- ESO-26 (Gastroesophageal junction adenocarcinoma) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- KLF5_HUMAN STAT1_HUMAN SRF_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KLF5_HUMAN | 2.95 | -0.01 | 1.00 | -5.14 | Concordant | |||
| STAT1_HUMAN | 2.69 | 1.09 | 1.50 | n/a | No Hit | |||
| SRF_HUMAN | 2.35 | -1.83 | 1.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.08 | 1.56 | 1.33 | n/a | No Hit | |||
| JUN_HUMAN | 0.12 | 1.01 | 1.00 | n/a | No Hit |
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Motif analysis
