rs72850544 chr11:9314546 C>T
- Sequence
gaagcgccacggctagagccactt[C/T]cggcgcgacctcctcacccgagac
- ASB in cell types
- K562 (myelogenous leukemia) thymus-derived CD34- cells 22RV1 (prostate carcinoma) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- NRF1_HUMAN BC11B_HUMAN ANDR_HUMAN CDK9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 0.65 | -0.42 | 2.00 | n/a | No Hit | |||
| BC11B_HUMAN | 2.42 | n/a | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.71 | -4.89 | 2.00 | n/a | No Hit | |||
| CDK9_HUMAN | 2.08 | 0.60 | 1.00 | n/a | n/a | |||
| ATF4_HUMAN | 1.21 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood