rs7295014 chr12:132491403 G>A

Sequence
tattgcttgtctggctgacggaca[G/A]tatttgctgagcaaatactgctcc
ASB in cell types
LNCaP (prostate carcinoma) T47D (invasive ductal carcinoma)
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN -0.13 1.09 1.003.8·10-6 1.42 0.76 Weak Concordant
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Motif analysis

FOXA1_HUMAN Weak Concordant
FOXA1_HUMAN pic

Genetic associations

EMBL-EBI prostate cancer,  prostate cancer (early onset)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Brain_Cerebellar_Hemisphere,  Brain_Cortex,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Muscle_Skeletal,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen

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