rs7296576 chr12:38316781 C>T
- Sequence
cctttgccttccggtatgtggccc[C/T]gtctggctagtcctgtctagcgcg
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) SEM (childhood B acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN SPT5H_HUMAN GABPA_HUMAN ERG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.53 | 0.02 | 1.05 | 0.26 | Weak Discordant | |||
| SPT5H_HUMAN | 2.38 | -0.47 | 1.00 | n/a | n/a | |||
| GABPA_HUMAN | 1.80 | 0.24 | 1.38 | n/a | No Hit | |||
| ERG_HUMAN | 1.25 | 0.04 | 1.00 | n/a | No Hit | |||
| CHD8_HUMAN | 2.13 | -1.60 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 10
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Nerve_Tibial, Testis, Thyroid, Whole_Blood