rs7297229 chr12:24911665 G>A

Sequence
caaattcctgagcttagtctgtgg[G/A]ctcctgcacttgctgaatcacctg
ASB in cell types
HepG2 (hepatoblastoma) CTV-1 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
TEAD3_HUMAN SPI1_HUMAN TFE3_HUMAN RAD51_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TEAD3_HUMAN -2.51 2.84 1.006.6·10-6 1.00 n/a No Hit
SPI1_HUMAN 1.44 0.25 9.3·10-41.00 1.11 n/a No Hit
TFE3_HUMAN -2.11 2.50 1.004.6·10-3 1.00 n/a No Hit
RAD51_HUMAN -2.24 2.50 1.000.02 1.00 n/a n/a
THB_HUMAN -3.41 2.02 1.000.02 1.50 0.70 Weak Concordant
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Motif analysis

THB_HUMAN Weak Concordant
THB_HUMAN pic

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  alzheimers disease,  arthritis including non-rheumatoid,  chronic kidney disease,  homa-b,  longstanding arthritis,  schizophrenia

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