rs729781 chr17:61409438 A>G
- Sequence
gcgagaacgaaacgacaaaaacgc[A/G]agaaaacaataaaacgctagaaag
- ASB in cell types
- SMMC-7721 (hepatocellular carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CATA_HUMAN CTCF_HUMAN KDM2B_HUMAN EZH2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CATA_HUMAN | n/a | 3.12 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.86 | 0.48 | 1.59 | n/a | No Hit | |||
| KDM2B_HUMAN | 1.30 | -1.31 | 1.67 | n/a | n/a | |||
| EZH2_HUMAN | 1.16 | -0.49 | 1.07 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid