rs7299019 chr12:104877307 G>T
- Sequence
tgatcttaggaggccccctagtgc[G/T]cacagagcagacactttagcaatc
- ASB in cell types
- glioblastoma cells MCF7 (Invasive ductal breast carcinoma) GM19240 (B cells Lymphoblastoid Cell Lines) esophagus squamous epithelium
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.41 | 1.52 | 1.72 | 1.48 | Weak Concordant |
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Motif analysis
