rs7299842 chr12:122054407 G>A

Sequence
ggccaaatacccatattattaaga[G/A]aaatgtttacaaaaggttaggacg
ASB in cell types
foreskin keratinocyte erythroid cells OCI-LY7 (diffuse large B-cell lymphoma) THP-1 (acute monocytic leukemia)
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Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
foreskin keratinocyte 0.79 n/a 2.2·10-51.00 2.50
erythroid cells n/a 2.57 1.006.8·10-3 3.00
OCI-LY7 (diffuse large B-cell lymphoma) 1.54 -0.29 9.3·10-31.00 1.12
THP-1 (acute monocytic leukemia) 0.48 0.82 0.830.01 1.00
GM12890 (Lymphoblastoid Cell Lines) 0.55 -0.38 0.021.00 1.00
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  body mass index (bmi),  college completion,  height,  infant head circumference,  obesity with early age of onset (age >2),  years of education
GTEx eQTL Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Muscularis,  Whole_Blood

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