rs7300527 chr12:125983459 A>C

Sequence
ccctcccccccccaggctcctccc[A/C]gaaagagcgcgaggcggaggggag
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) breast tumor
ASB for transcription factors
ESR1_HUMAN IKZF1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.71 -1.91 8.3·10-31.00 2.00 n/a No Hit
IKZF1_HUMAN n/a 2.40 1.000.01 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP abnormal involuntary movement scale,  tardive dyskinesia,  triglycerides
GTEx eQTL Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Liver,  Minor_Salivary_Gland,  Pancreas,  Prostate,  Spleen,  Testis

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