rs7303735 chr12:124151757 C>T

Sequence
tttctagaaaggagcagtaacttc[C/T]gggtcattgtcatggaaaggagtg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
GABP1_HUMAN NR2C1_HUMAN RFX1_HUMAN ZBT40_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GABP1_HUMAN 2.96 n/a 3.7·10-81.00 2.00 n/a n/a
NR2C1_HUMAN 2.07 n/a 1.9·10-41.00 2.00 0.24 Weak Discordant
RFX1_HUMAN 1.59 -1.88 5.4·10-41.00 1.67 n/a No Hit
ZBT40_HUMAN 2.40 n/a 0.011.00 2.00 n/a No Hit
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Motif analysis

NR2C1_HUMAN Weak Discordant
NR2C1_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  birth weight,  parkinsons disease
GTEx eQTL Adipose_Subcutaneous,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Whole_Blood

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