rs7305907 chr12:48717052 A>G

Sequence
gggtcaggctgcgaggccgcaatt[A/G]tagtgggatggggcggccgcccac
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) thymus-derived CD34- cells HCT-116 (colon carcinoma)
ASB for transcription factors
RBM25_HUMAN BC11B_HUMAN ATRX_HUMAN STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RBM25_HUMAN n/a 3.59 1.002.6·10-5 2.00 n/a n/a
BC11B_HUMAN -0.25 2.88 1.003.7·10-3 2.00 n/a n/a
ATRX_HUMAN 2.71 -2.78 8.5·10-31.00 1.00 n/a n/a
STAG1_HUMAN 0.16 1.05 0.980.03 1.00 n/a n/a
IRF5_HUMAN 1.91 -1.57 0.031.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Liver,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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