rs7306508 chr12:52970043 A>G

Sequence
attccaaaaatgttcaggaaagga[A/G]gggaaggtgcccaccagtgggaca
ASB in cell types
HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line)
ASB for transcription factors
ESR1_HUMAN WT1_HUMAN SP7_HUMAN PRGR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.41 1.08 1.007.6·10-8 1.73 2.25 Concordant
WT1_HUMAN 3.82 n/a 5.1·10-71.00 2.00 2.26 Discordant
SP7_HUMAN 3.28 n/a 7.9·10-51.00 2.00 n/a No Hit
PRGR_HUMAN 1.36 0.11 0.011.00 1.29 -3.00 Concordant
ZXDB_HUMAN 3.03 -5.54 0.021.00 2.00 n/a n/a
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Motif analysis

WT1_HUMAN Discordant
WT1_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Thyroid

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