rs730775 chr6:44264337 A>G

Sequence
gaggaagggttaagtgagggagtg[A/G]gacacgacagttagtgggactggg
ASB in cell types
K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells) macrophages form periferal blood
ASB for transcription factors
SPI1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN 1.28 1.57 0.021.00 1.87 0.60 Weak Discordant
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Motif analysis

SPI1_HUMAN Weak Discordant
SPI1_HUMAN pic

Genetic associations

EMBL-EBI monocyte count,  monocyte percentage of white cells
GRASP coronary artery calcification (cac),  eye color,  irritible bowel syndrome,  rheumatoid arthritis,  triglycerides,  years of education
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Artery_Coronary,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Thyroid

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