rs730870 chr5:126539301 A>G
- Sequence
acctcctggatacaaagtcaacac[A/G]actcacttccctgctaaacagatg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte THP-1 (acute monocytic leukemia) MCF7 WS8 cells
- ASB for transcription factors
- FOXA1_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.01 | 1.89 | 2.29 | -1.23 | Weak Discordant | |||
| GATA3_HUMAN | -1.79 | 2.73 | 2.00 | n/a | No Hit |
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Motif analysis
