rs7308997 chr12:7995744 T>C
- Sequence
ctgctctttgcctacttcaaactg[T/C]tgctcatcccctaaaaactcagct
- ASB in cell types
- BEAS-2B (bronchial epithelium) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- GCR_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.72 | -1.62 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.75 | -0.14 | 1.32 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Testis