rs730976 chr5:181173875 G>T
- Sequence
gcctcaaccattggaacctgggac[G/T]aactgaacccacttcacttgctgt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) CAR-T cells LNCaP (prostate carcinoma)
- ASB for transcription factors
- IRF4_HUMAN MTOR_HUMAN ARI1B_HUMAN REQU_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF4_HUMAN | -0.44 | 2.42 | 1.00 | 0.57 | Weak Concordant | |||
| MTOR_HUMAN | -1.56 | 1.91 | 1.00 | n/a | n/a | |||
| ARI1B_HUMAN | 2.78 | -5.01 | 2.00 | n/a | n/a | |||
| REQU_HUMAN | 2.29 | -0.72 | 2.00 | n/a | n/a | |||
| SUMO2_HUMAN | 1.94 | 1.02 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Stomach, Testis, Thyroid