rs7310809 chr12:27711408 C>T

Sequence
tcattcaacaggcgttgatgacct[C/T]catttaacagagattgtagggatg
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 0.00 1.40 1.000.04 1.62 0.33 Weak Concordant
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Motif analysis

ESR1_HUMAN Weak Concordant
ESR1_HUMAN pic

Genetic associations

GRASP obesity with early age of onset (age >2),  transmission distortion
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Ovary,  Pituitary,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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