rs731082 chr8:100527545 C>T
- Sequence
gcaggtggctaacagaacattatg[C/T]gcacatgacatgtagtactttctg
- ASB in cell types
- BEAS-2B (bronchial epithelium) LHSAR (prostate epithelial cells) 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- GCR_HUMAN ANDR_HUMAN REQU_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.41 | 3.59 | 1.09 | 4.98 | Concordant | |||
| ANDR_HUMAN | -4.02 | 2.56 | 1.70 | 3.55 | Concordant | |||
| REQU_HUMAN | 2.49 | -2.10 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic