rs7311974 chr12:107057220 A>T
- Sequence
caatacttagtcatacttttgtta[A/T]caagattgaaaaatctacactgac
- ASB in cell types
- TTC-1240 (Rhabdoid tumor of the kidney) BEAS-2B (bronchial epithelium) 22RV1 (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- SMRC1_HUMAN FOXA1_HUMAN GCR_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMRC1_HUMAN | -0.22 | 2.86 | 1.25 | n/a | n/a | |||
| FOXA1_HUMAN | -0.37 | 1.65 | 1.75 | -3.99 | Discordant | |||
| GCR_HUMAN | -0.43 | 1.92 | 1.11 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis