rs7312379 chr12:124939964 T>A
- Sequence
cccagaaaagaccaacacaagggg[T/A]aggggatgtagctcagtggtagag
- ASB in cell types
- CTV-1 (Adult T acute lymphoblastic leukemia) HCT-116 (colon carcinoma) CD14+ monocytes THP-1 (acute monocytic leukemia)
- ASB for transcription factors
- SPI1_HUMAN MAX_HUMAN STAT1_HUMAN ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | -0.38 | 2.25 | 1.40 | 5.33 | Concordant | |||
| MAX_HUMAN | 2.94 | -0.60 | 1.33 | n/a | No Hit | |||
| STAT1_HUMAN | -0.56 | 2.65 | 2.00 | n/a | No Hit | |||
| ATF3_HUMAN | 1.55 | -0.97 | 1.00 | n/a | No Hit | |||
| MNT_HUMAN | 2.19 | -1.85 | 1.00 | n/a | No Hit |
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Motif analysis
