rs7312936 chr12:103880794 T>C
- Sequence
atttcctaccagtttcaactctca[T/C]cccctcgccccttacatcaccata
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HEK293 (embryonic kidney)
- ASB for transcription factors
- ZN629_HUMAN TBX21_HUMAN NR2C1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN629_HUMAN | -5.64 | 3.30 | 2.00 | n/a | n/a | |||
| TBX21_HUMAN | -2.45 | 2.39 | 1.00 | 4.63 | Concordant | |||
| NR2C1_HUMAN | -2.45 | 2.39 | 1.00 | 0.88 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Muscle_Skeletal, Testis, Thyroid