rs731457 chr20:38790653 A>G
- Sequence
cctgatactgccacttggtggcca[A/G]tagaaactatgcaagacccgctgt
- ASB in cell types
- THP-1 (acute monocytic leukemia) 2588 (Lymphoblastoid Cell Lines) heart left ventricle MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.93 | 2.56 | 2.15 | -0.41 | Weak Discordant | |||
| RAD21_HUMAN | -0.02 | 1.83 | 1.11 | n/a | n/a | |||
| STAG1_HUMAN | 0.39 | 2.86 | 1.67 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood