rs731458 chr20:38790680 C>G
- Sequence
gaaactatgcaagacccgctgttt[C/G]gccctttcttcttccttaagagtt
- ASB in cell types
- THP-1 (acute monocytic leukemia) 2588 (Lymphoblastoid Cell Lines) GM19099 (female B-cells Lymphoblastoid Cell Lines) heart left ventricle
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.88 | 2.58 | 1.98 | n/a | No Hit | |||
| STAG1_HUMAN | 0.72 | 3.06 | 3.00 | n/a | n/a | |||
| RAD21_HUMAN | -0.11 | 1.66 | 1.18 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood