rs731499 chr20:44210821 G>A
- Sequence
ggcggcccgcgcctcgggagtcgc[G/A]ttgcgcctgcgcactccggcatgc
- ASB in cell types
- HepG2 (hepatoblastoma) LNCaP (prostate carcinoma) CD14+ monocytes GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- TBP_HUMAN RBM25_HUMAN STAT1_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 1.57 | -0.42 | 1.00 | n/a | No Hit | |||
| RBM25_HUMAN | -0.16 | 2.25 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 2.37 | -0.35 | 3.00 | n/a | No Hit | |||
| TYY1_HUMAN | 0.27 | 1.32 | 1.64 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood