rs7316209 chr12:4758333 G>A
- Sequence
tggtgctcatcaatgtgtgtaaat[G/A]gagatgatgggtaggaaaggttaa
- ASB in cell types
- LNCaP (prostate carcinoma) WA09 (embryonic stem cells) CD34+ stem cells-derived erythroblasts GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXA1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | n/a | 2.96 | 1.77 | 5.11 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus, Whole_Blood