rs7318817 chr13:28043571 C>T
- Sequence
aaatcttgatacatgactaaaata[C/T]tgtacttcacaaaccaaattcggt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells lymphoblastoid cell line) | 0.93 | 0.64 | 1.14 |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, body mass index (bmi), college completion, ldl cholesterol, obesity with early age of onset (age >2), rheumatoid arthritis, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Artery_Coronary, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Esophagus_Mucosa, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum