rs7338 chr17:7014384 C>T

Sequence
tcccacccttgccggcgccctctg[C/T]gggactgggtttcccgggcgagag
ASB in cell types
GM19239 (male B-cells lymphoblastoid cell line)
ASB for transcription factors
CTCF_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.98 0.22 0.031.00 1.17 -2.84 Concordant
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Motif analysis

CTCF_HUMAN Concordant
CTCF_HUMAN pic

Genetic associations

GRASP cystatin c in serum hdl cholesterol
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Coronary Artery_Tibial Brain_Frontal_Cortex_BA9 Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Pancreas Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Stomach Thyroid Uterus Whole_Blood

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