rs73406190 chr12:115370880 T>C
- Sequence
ttagatgctgctgtgacacaagat[T/C]atgacgttttgatgggattaggag
- ASB in cell types
- D283 Med (medulloblastoma)
- ASB for transcription factors
- OTX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| OTX2_HUMAN | 1.71 | -1.23 | 1.11 | -3.67 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Stomach, Thyroid