rs73412140 chr6:33789237 G>T
- Sequence
gatgggaaggtcggtcgccatgtt[G/T]ggaaggtctgcacttggcctttgg
- ASB in cell types
- HepG2 (hepatoblastoma) VCaP (prostate carcinoma) CD14+ monocytes HCC1806(Squamous cell breast carcinoma, acantholytic variant)
- ASB for transcription factors
- STAT1_HUMAN BRD2_HUMAN ANDR_HUMAN ELL2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.81 | 1.23 | 2.33 | n/a | No Hit | |||
| BRD2_HUMAN | 1.06 | 2.40 | 1.80 | n/a | n/a | |||
| ANDR_HUMAN | 2.49 | -0.38 | 2.20 | n/a | No Hit | |||
| ELL2_HUMAN | 1.64 | 0.52 | 1.00 | n/a | n/a | |||
| CDK9_HUMAN | 2.53 | -0.04 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg