rs73437941 chr15:84833597 C>T

Sequence
catacgtgcactcttccttcctca[C/T]tgctgatagcatttcctaaacaag
ASB in cell types
K562 (myelogenous leukemia) HUVEC-C (HUVEC, umbilical vein endothelial cells)
ASB for transcription factors
EMSY_HUMAN FOXK2_HUMAN TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EMSY_HUMAN -5.17 2.99 1.006.1·10-3 2.00 n/a n/a
FOXK2_HUMAN n/a 2.43 1.000.01 2.00 n/a No Hit
TF65_HUMAN 2.67 n/a 0.021.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis

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