rs73439311 chr22:50314905 G>A
- Sequence
cccacagtgtctgcatatgagtca[G/A]cacaggccggaagcacctggggcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CAR-T cells GM01310 ( Transformed lymphovlasoid cell line )
- ASB for transcription factors
- IRF4_HUMAN COT1_HUMAN AHR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF4_HUMAN | 1.92 | -1.34 | 1.00 | n/a | No Hit | |||
| COT1_HUMAN | 1.05 | -1.05 | 1.00 | n/a | No Hit | |||
| AHR_HUMAN | 1.39 | -0.96 | 1.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood