rs73444597 chr15:63834304 C>T
- Sequence
tgaggagtggggggccatgcagtg[C/T]gcccccttttcctcgtggtgggca
- ASB in cell types
- MS-1 (Small cell lung carcinoma) GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN KDM6A_HUMAN RBBP5_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.74 | 0.69 | 1.33 | -0.84 | Weak Concordant | |||
| KDM6A_HUMAN | 2.52 | -1.55 | 2.00 | n/a | n/a | |||
| RBBP5_HUMAN | 1.49 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Heart_Left_Ventricle, Muscle_Skeletal, Testis