rs7346851 chr20:62874157 G>A
- Sequence
gcacctggctctgccttctagata[G/A]cagcagcaaattagtgaaagtact
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- MNT_HUMAN RAD51_HUMAN CTCF_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 1.85 | -3.18 | 1.67 | n/a | No Hit | |||
| RAD51_HUMAN | 1.53 | -1.75 | 1.50 | n/a | n/a | |||
| CTCF_HUMAN | 2.89 | -0.25 | 1.00 | n/a | No Hit | |||
| PKNX1_HUMAN | 3.30 | n/a | 2.00 | n/a | No Hit | |||
| RING2_HUMAN | 2.12 | n/a | 1.50 | n/a | n/a |
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Motif analysis
