rs73544817 chr19:6125692 A>C
- Sequence
cttggaggctttatctggagctgc[A/C]gctaccaggagcccccttctggtc
- ASB in cell types
- GM19238 (female B-cells lymphoblastoid cell lines) HMEC (human mammary epithelial cells) human astrocytes from spinal cord HuCCT1 (intrahepatic cholangiocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.45 | 0.36 | 1.19 | 0.27 | Weak Discordant | |||
| STAG1_HUMAN | 1.07 | -0.82 | 1.00 | n/a | n/a | |||
| SMC1A_HUMAN | 1.72 | -3.13 | 1.50 | n/a | n/a |
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Motif analysis
