rs73581711 chr19:48646791 G>T
- Sequence
ccacatctgcgtaggctggggagg[G/T]gaagggagcctgagatggatacgg
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) CTV-1 (Adult T acute lymphoblastic leukemia) HMEC (human mammary epithelial cells)
- ASB for transcription factors
- ZN398_HUMAN SPI1_HUMAN IKZF1_HUMAN PRD10_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN398_HUMAN | 1.28 | n/a | 2.00 | n/a | n/a | |||
| SPI1_HUMAN | 1.72 | -1.50 | 1.11 | -3.79 | Concordant | |||
| IKZF1_HUMAN | 2.82 | -0.93 | 1.67 | n/a | n/a | |||
| PRD10_HUMAN | 2.40 | -0.79 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.58 | 0.38 | 1.32 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood