rs7359253 chr15:56821873 T>C

Sequence
gtaattcttccattctcttggaca[T/C]gtacttttcagggttggcctgcag
ASB in cell types
THP-1 (acute monocytic leukemia) spleen GM12890 (Lymphoblastoid Cell Lines) Peyer's patch
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.35 0.88 4.3·10-211.00 1.28 n/a No Hit
RAD21_HUMAN 1.08 0.27 4.1·10-31.00 1.27 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  height,  ldl cholesterol,  neuroticism,  simpson-angus scale,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Esophagus_Mucosa,  Esophagus_Muscularis,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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